RCSB Protein Data Bank - RCSB PDB - 2NY7 Structure Summary

This browser is either not Javascript enabled or has it turned off.
This site will not function correctly without Javascript.

HIV-1 gp120 Envelope Glycoprotein Complexed with the Broadly Neutralizing CD4-Binding-Site Antibody b12

DOI:10.2210/pdb2ny7/pdb

2NY7

Display Files

FASTA Sequence
PDB File
PDB File (Header)
mmCIF File
mmCIF File (Header)
PDBML/XML File
PDBML/XML File (Header)

Download Files

FASTA Sequence
PDB File (Text)
PDB File (gz)
mmCIF File
mmCIF File (gz)
PDBML/XML File
PDBML/XML File (gz)
Structure Factor (Text)
Structure Factor (gz)

Share this Page

Facebook Twitter LinkedIn Email

Link this Page

Primary Citation

Related Citations in PDB Entry (REMARK 1) Hide

Molecular Description

Hide

Classification:	Viral Protein/immune System
Structure Weight:	86621.33

Molecule:

ENVELOPE GLYCOPROTEIN GP120

Polymer:

Type:

protein

Length:

317

Chains:

Fragment:

CORE

Mutation:

M95W, W96C, I109C, T257S, V275C, S334A, S375W, Q428C, A433M

Organism

Human immunodeficiency virus 1

Gene Name

env

UniProtKB:

| | P04578

Molecule:

ANTIBODY b12, HEAVY CHAIN

Polymer:

Type:

protein

Length:

230

Chains:

Fragment:

ANTIGEN-BINDING FRAGMENT, FAB

Organism

Homo sapiens

Molecule:

ANTIBODY b12, LIGHT CHAIN

Polymer:

Type:

protein

Length:

215

Chains:

Fragment:

ANTIGEN-BINDING FRAGMENT, FAB

Organism

Homo sapiens

Source

Hide

Polymer: 1

Scientific Name:

Human immunodeficiency virus 1

Taxonomy

Expression System:

Homo sapiens

Polymer: 2

Scientific Name:

Homo sapiens

Taxonomy

Common Name:

Human

Expression System:

Cricetulus griseus

Polymer: 3

Scientific Name:

Homo sapiens

Taxonomy

Common Name:

Human

Expression System:

Cricetulus griseus

Related PDB Entries Hide

Identifier Details

1HZH Structure of IgG b12

Ligand Chemical Component

Hide

Identifier		Formula	Name	Interactions
NAG Search Download		C₈ H₁₅ N O₆	N-ACETYL-D-GLUCOSAMINE		Ligand Explorer

External Domain Annotations Hide
SCOP Classification v1.75: 5 Domains - data from SCOP

CATH Classification v3.4.0: 4 Domains - data from CATH

Pfam Classification: 12 Domains - data from Pfam
Structural Biology Knowledgebase Data Hide

Data in orange boxes are gathered from external resources (when available).

Reset Layout

Biological Assembly 1

View in 3D

More Images...

Biological assembly 1 assigned by authors and generated by PISA (software)

Downloadable viewers:

MyPDB Personal Annotations Hide

Deposition Summary

Hide

Authors: Zhou, T., Xu, L., Dey, B., Hessell, A.J., Van Ryk, D., Xiang, S.H., Yang, X., Zhang, M.Y., Zwick, M.B., Arthos, J., Burton, D.R., Dimitrov, D.S., Sodroski, J., Wyatt, R., Nabel, G.J., Kwong, P.D.

Deposition:	2006-11-20
Release:	2007-02-06
Last Modified (REVDAT):	2011-07-13

Revision History Hide

Mouse over text for details

2011-07-13
Non-polymer description

2011-07-13
Version format compliance

Experimental Details

Hide

Method: X-RAY DIFFRACTION
Exp. Data:
Structure Factors
EDS

Unit Cell:
	Length [Å]	Angles [°]
	a = 101.96	α = 90.00
	b = 101.96	β = 90.00
	c = 298.29	γ = 120.00

Molecule of the Month Hide
Epidermal Growth Factor

Nanobodies

Antibodies

Hemagglutinin