HIV-1 gp120 Envelope Glycoprotein (M95W, W96C, T257S, V275C, S334A, S375W, A433M) Complexed with CD4 and Antibody 17b     DOI:10.2210/pdb2ny0/pdb

2NY0 Display Files close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header) Download Files close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A) Print this Page Share this Page close Email Delicious Stumble Google More... Link this Page

Primary Citation       Molecular Description Hide Classification: Viral Protein/immune System Structure Weight: 106211.90   Molecule: ENVELOPE GLYCOPROTEIN GP120 Polymer: 1 Type: polypeptide(L) Length: 317 Chains: A Fragment: CORE Mutation: M95W, W96C, T257S, V275C, S334A, S375W, A433M Molecule: T-cell surface glycoprotein CD4 Polymer: 2 Type: polypeptide(L) Length: 184 Chains: B Fragment: D1D2, N-TERMINAL TWO DOMAIN FRAGMENT Molecule: ANTIBODY 17B, LIGHT CHAIN Polymer: 3 Type: polypeptide(L) Length: 214 Chains: C Fragment: ANTIGEN-BINDING FRAGMENT, FAB Molecule: ANTIBODY 17B, HEAVY CHAIN Polymer: 4 Type: polypeptide(L) Length: 229 Chains: D Fragment: ANTIGEN-BINDING FRAGMENT, FAB       Source Hide Polymer: 1 Scientific Name: Human immunodeficiency virus 1 Expression System: Homo sapiens   Polymer: 2 Scientific Name: Homo sapiens Common Name: Human Expression System: Escherichia coli   Polymer: 3 Scientific Name: Homo sapiens Common Name: Human Expression System: Homo sapiens   Polymer: 4 Scientific Name: Homo sapiens Common Name: Human Expression System: Homo sapiens         Related PDB Entries Hide Id Details 1GC1  The same ternary complex at 2.5 A  1RZJ  The same ternary complex at 2.2 A  1RZK  The same ternary complex from a primary isolate  2NXY    2NXZ    2NY1    2NY2    2NY3    2NY4    2NY5    2NY6    2NY7          Ligand Chemical Component Hide Identifier Name Formula Interaction View Links HEZ     HEXANE-1,6-DIOL C6 H14 O2 Ligand Explorer NAG     N-ACETYL-D-GLUCOSAMINE C8 H15 N O6 Ligand Explorer       Derived Data Hide SCOP Classification v1.75 - (7 Domains) CATH Classification v3.2.0 - (3 Domains) PFAM Classification - (10 Domains) GO Terms - (49 Terms)     Reset Layout

Biological Assembly     More Images... View in Jmol Other Viewers close KiNG WebMol QuickPDB FirstGlance Kiosk SimpleViewer Protein Workshop Ligand Explorer Biological assembly assigned by authors         Deposition Summary Hide Authors:   Zhou, T.,   Xu, L.,   Dey, B.,   Hessell, A.J.,   Van Ryk, D.,   Xiang, S.H.,   Yang, X.,   Zhang, M.Y.,   Zwick, M.B.,   Arthos, J.,   Burton, D.R.,   Dimitrov, D.S.,   Sodroski, J.,   Wyatt, R.,   Nabel, G.J.,   Kwong, P.D. Deposition:   2006-11-20 Release:   2007-02-06 Last Modified (REVDAT):   2009-02-24       Experimental Details Hide Method:   X-RAY DIFFRACTION Experimental Data:    [ EDS ] Resolution[Å]: 2.20 R-Value: 0.204 (obs.) R-Free: 0.242 Space Group: P 2 2 21 Unit Cell:   Length [Å] Angles [°] a = 71.89 α = 90.00  b = 87.31 β = 90.00  c = 196.46 γ = 90.00        Structure Links Hide Molecule of the Month Features: T-Cell Receptor