2NNH

CYP2C8dH complexed with 2 molecules of 9-cis retinoic acid

Structural Biology Knowledgebase: 2NNH SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.290
  • R-Value Work: 0.244

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2NNH

Classification: OXIDOREDUCTASE ELECTRON TRANSPORT

Total Structure Weight: 111249.33

Macromolecule Entities
Molecule Chains Length Organism Details
Cytochrome P450 2C8 A, B 476 Homo sapiens EC#: 1.14.14.1 IUBMB
Gene Name(s): CYP2C8 Gene View

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A, B PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer
 
JSmol
PLM
Query on PLM

A, B PALMITIC ACID
C16 H32 O2
IPCSVZSSVZVIGE-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
REA
Query on REA

A, B RETINOIC ACID
C20 H28 O2
SHGAZHPCJJPHSC-YCNIQYBTSA-N
Ligand Explorer
 
JSmol
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.290
  • R-Value Work: 0.244
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 139.81 α = 90.00
b = 163.62 β = 90.00
c = 73.56 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-10-24
  • Released Date: 2007-10-23
  • Deposition author(s): Schoch, G.A., Yano, J.K., Stout, C.D., Johnson, E.F.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4