2LBD

LIGAND-BINDING DOMAIN OF THE HUMAN RETINOIC ACID RECEPTOR GAMMA BOUND TO ALL-TRANS RETINOIC ACID


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.06 Å
  • R-Value Free: 0.313
  • R-Value Work: 0.210

Literature

Macromolecules
Sequence Display for 2LBD

Classification: NUCLEAR RECEPTOR

Total Structure Weight: 30493.49

Macromolecule Entities
Molecule Chains Length Organism Details
RETINOIC ACID RECEPTOR GAMMA A 267 Homo sapiens Fragment: LBD (LIGAND-BINDING DOMAIN), RESIDUES 178 - 423
Gene Name(s): RARG Gene View NR1B3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
REA
Query on REA

A RETINOIC ACID
C20 H28 O2
SHGAZHPCJJPHSC-YCNIQYBTSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
REA IC50: >1000 nM (86) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.06 Å
  • R-Value Free: 0.313
  • R-Value Work: 0.210
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 60.60 α = 90.00
b = 60.60 β = 90.00
c = 155.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1997-08-19
  • Released Date: 1997-11-12
  • Deposition author(s): Renaud, J.-P., Rochel, N., Ruff, M., Moras, D., Structural Proteomics in Europe (SPINE)

Revision History

  • Version 1_0: 1997-11-12

    Type: Initial release

  • Version 1_1: 2008-03-24

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance