2JKU

Crystal structure of the N-terminal region of the biotin acceptor domain of human propionyl-CoA carboxylase

Structural Biology Knowledgebase: 2JKU SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.166
  • R-Value Work: 0.148

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2JKU

Classification: LIGASE

Total Structure Weight: 10328.77

Macromolecule Entities
Molecule Chains Length Organism Details
PROPIONYL-COA CARBOXYLASE ALPHA CHAIN, MITOCHONDRIAL A 94 Homo sapiens EC#: 6.4.1.3 IUBMB
Fragment: BIOTIN ACCEPTOR DOMAIN, RESIDUES 633-703
Gene Name(s): PCCA Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PG4
Query on PG4

A TETRAETHYLENE GLYCOL
C8 H18 O5
UWHCKJMYHZGTIT-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.166
  • R-Value Work: 0.148
  • Space Group: P 64 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 56.11 α = 90.00
b = 56.11 β = 90.00
c = 58.08 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-08-30
  • Released Date: 2008-09-09
  • Deposition author(s): Healy, S., Yue, W.W., Kochan, G., Pilka, E.S., Murray, J.W., Roos, A.K., Filippakopoulos, P., von Delft, F., Arrowsmith, C., Wikstrom, M., Edwards, A., Bountra, C., Gravel, R.A., Oppermann, U.

Revision History

  • 2013-12-04
    Type: Source and taxonomy | Details: SOURCE
  • 2013-12-04
    Type: Version format compliance | Details: REMARK 4