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STRUCTURE OF A 9-SUBUNIT ARCHAEAL EXOSOME BOUND TO RNA
DOI:10.2210/pdb2jea/pdb   NDB ID: 2JEA
2JEA
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase/rna
    Structure Weight: 98080.28
    Molecule: EXOSOME COMPLEX EXONUCLEASE 2
    Polymer: 1 Type: protein Length: 277
    Chains: A
    EC#: 3.1.13   
    Organism: Sulfolobus solfataricus
    Gene Names: rrp42 SSO0732 C20_023
    UniProtKB: Protein Feature View | Search PDB | Q9UXC0  
    Molecule: EXOSOME COMPLEX EXONUCLEASE 1
    Polymer: 2 Type: protein Length: 250
    Chains: B
    EC#: 3.1.13   
    Mutation: YES
    Organism: Sulfolobus solfataricus
    Gene Names: rrp41 SSO0735
    UniProtKB: Protein Feature View | Search PDB | Q9UXC2  
    Molecule: RNA
    Polymer: 3 Type: rna Length: 35
    Chains: C
    Molecule: EXOSOME COMPLEX RNA-BINDING PROTEIN 1
    Polymer: 4 Type: protein Length: 251
    Chains: I
    Organism: Sulfolobus solfataricus
    Gene Names: rrp4 SSO0736 C20_026
    UniProtKB: Protein Feature View | Search PDB | Q9UXC4  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Sulfolobus solfataricus   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Sulfolobus solfataricus   Taxonomy   Expression System: Escherichia coli  
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 4
    Scientific Name: Sulfolobus solfataricus   Taxonomy   Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    2BR2  RNASE PH CORE OF THE ARCHAEAL EXOSOME 
    2C37  RNASE PH CORE OF THE ARCHAEAL EXOSOME IN COMPLEX WITH U8 RNA 
    2C38  RNASE PH CORE OF THE ARCHAEAL EXOSOME IN COMPLEX WITH A5 RNA 
    2C39  RNASE PH CORE OF THE ARCHAEAL EXOSOME IN COMPLEX WITH ADP 
    2JE6  STRUCTURE OF A 9-SUBUNIT ARCHAEAL EXOSOME 
    2JEB  STRUCTURE OF A 9-SUBUNIT ARCHAEAL EXOSOME BOUND TO MN IONS 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    1PE
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    1PE C10 H22 O6
    PENTAETHYLENE GLYCOL
    1PE:2JEA
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: 2JEA
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Lorentzen, E.,  Conti, E.

    Deposition:   2007-01-16
    Release:   2007-04-03
    Last Modified (REVDAT):   2010-02-02
     
  •   Revision History    Hide
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    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    Resolution[Å]:   2.33
    R-Value: 0.207 (obs.)
    R-Free: 0.243
    Space Group: P 21 3
    Unit Cell:
      Length [Å] Angles [°]
    a = 135.85 α = 90.00 
    b = 135.85 β = 90.00 
    c = 135.85 γ = 90.00