2JBF

Structure of PBP-A, L158E mutant. Acyl-enzyme complex with penicillin- G.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.218
  • R-Value Work: 0.178

Literature

Macromolecules
Sequence Display for 2JBF

Classification: HYDROLASE

Total Structure Weight: 132718.80

Macromolecule Entities
Molecule Chains Length Organism Details
TLL2115 PROTEIN A, B, C, D 298 Synechococcus elongatus EC#: 3.4.16.4 IUBMB
Fragment: RESIDUES 93-368
Mutation: L158E
Gene Name(s): tll2115
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PNM
Query on PNM

A, B, C, D OPEN FORM - PENICILLIN G
C16 H20 N2 O4 S
OGFZUTGOGYUTKZ-KWCYVHTRSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.218
  • R-Value Work: 0.178
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 86.58 α = 90.00
b = 91.53 β = 90.00
c = 145.71 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-12-06
  • Released Date: 2008-02-05
  • Deposition author(s): Evrard, C., Declercq, J.-P.

Revision History

  • Version 1_0: 2008-02-05

    Type: Initial release

  • Version 1_1: 2011-06-09

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance