2J5F

CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN IN COMPLEX WITH AN IRREVERSIBLE INHIBITOR 34-JAB

Structural Biology Knowledgebase: 2J5F SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.246
  • R-Value Work: 0.190

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2J5F

Classification: TRANSFERASE

Total Structure Weight: 37673.62

Macromolecule Entities
Molecule Chains Length Organism Details
EPIDERMAL GROWTH FACTOR RECEPTOR A 327 Homo sapiens EC#: 2.7.10.1 IUBMB
Fragment: KINASE DOMAIN, RESIDUES 696-1022
Gene Name(s): EGFR Gene View ERBB ERBB1 HER1

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DJK
Query on DJK

A N-[4-(3-BROMO-PHENYLAMINO)-QUINAZOLIN-6-YL]- ACRYLAMIDE
C17 H13 Br N4 O
HTUBKQUPEREOGA-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
DJK IC50: 0.08 - 152 nM (99 - 100) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.246
  • R-Value Work: 0.190
  • Space Group: I 2 3
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 145.88 α = 90.00
b = 145.88 β = 90.00
c = 145.88 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-09-14
  • Released Date: 2007-02-27
  • Deposition author(s): Yun, C.-H., Eck, M.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4