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Gramicidin D complex with KI
2IZQ
Primary Citation
 
 
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  •   Molecular Description Hide
    Classification: Antibiotic
    Structure Weight: 9003.40
    Molecule: GRAMICIDIN D
    Polymer: 1 Type: protein Length: 16
    Chains: A, B, C, D
    Organism Brevibacillus brevis
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Brevibacillus brevis   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1AL4  CRYSTAL STRUCTURE OF GRAMICIDIN D IN N-PROPANOL 
    1ALX  CRYSTAL STRUCTURE OF GRAMICIDIN D IN METHANOL 
    1ALZ  CRYSTAL STRUCTURE OF GRAMICIDIN D IN ETHANOL 
    1AV2  CRYSTAL STRUCTURE OF GRAMICIDIN A COMPLEXED WITH CESIUM CHLORIDE 
    1BDW  CRYSTAL STRUCTURE OF GRAMICIDIN A FROM BACILLUS BREVIS 
    1C4D  CRYSTAL STRUCTURE OF GRAMICIDIN A COMPLEXED WITH CESIUM CHLORIDE 
    1GMK  CRYSTAL STRUCTURE OF GRAMICIDIN A COMPLRXED WITH POTASSIUM THIOCYANATE 
    1GRM  SOLUTION STRUCTURE OF THE GRAMICIDIN A 
    1JNO  SOLUTION STRUCTURE OF GRAMICIDIN A IN SODIUM DODECYL SULFATE MICELLES 
    1JO3  SOLUTION STRUCTURE OF GRAMICIDIN B IN SODIUM DODECYL SULFATE MICELLES 
    1JO4  SOLUTION STRUCTURE OF GRAMICIDIN C IN SODIUM DODECYL SULFATE MICELLES 
    1KQE  SOLUTION STRUCTURE OF A LINKED SHORTENED GRAMICIDIN A IN BENZENE/ACETONE 10:1 
    1MAG  SOLID STATE NMR STRUCTURE OF GRAMICIDIN A IN HYDRATED DMPC BILAYERS, 
    1MIC  SOLUTION STRUCTURE OF GRAMICIDIN A IN METHANOL IN THE PRESENCE OF CACL 
    1NG8  SOLUTION STRUCTURE OF GRAMICIDIN A (W15G) IN SODIUM DODECYL SULFATE MICELLES 
    1NRM  SOLUTION STRUCTURE OF GRAMICIDIN A IN DODECYL PHOSPHOCHOLINE MICELLES 
    1NRU  SOLUTION STRUCTURE OF GRAMICIDIN A IN DODECYL PHOSPHOCHOLINE MICELLES IN THE PRESENCE OF EXCESS NA+ 
    1NT5  SOLUTION STRUCTURE OF GRAMICIDIN A (V1F) IN SODIUM DODECYL SULFATE MICELLES 
    1NT6  SOLUTION STRUCTURE OF F1-GRAMICIDIN C IN SODIUM DODECYL SULFATE MICELLES 
    1TK2  CRYSTAL STRUCTURE OF GRAMICIDIN S COMPLEXED WITH ALKALINE PROTEINASE SAVINASE 
    1TKQ  SOLUTION STRUCTURE OF A LINKED UNSYMMETRIC GRAMICIDIN A IN A MEMBRANE-ISOELECTRICAL SOLVENTS MIXTURE, IN THE PRESENCE OF CSCL 
    1W5U  CRYSTAL STRUCTURE OF GRAMICIDIN D IN ETHANOL 
    2XDC  CRYSTAL STRUCTURE OF GRAMICIDIN A FROM CRYSTALS GROWN IN A LIPID CUBIC PHASE. 
    3L8L  CRYSTAL STRUCTURE OF GRAMICIDIN D COMPLEX WITH NAI 
     
  •   Biologically Interesting Molecules (BIRD) Hide
    Identifier Image Name Type Class Chain ID  
    PRD_000152 Search  PRD_000152 GRAMICIDIN D Polypeptide Antibiotic A,C
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name Interactions
    IOD
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    IOD I
    IODIDE ION
    K
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    K K
    POTASSIUM ION
    MOH
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    MOH C H4 O
    METHANOL
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    FVA
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    FVA C6 H11 N O3 VAL lPeptideLinking
    DLE
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    DLE C6 H13 N O2 dPeptideLinking
    DVA
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    DVA C5 H11 N O2 dPeptideLinking
    ETA
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    ETA C2 H7 N O lPeptideCarboxyTerminus
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
 
 
 
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  •   Deposition Summary Hide
    Authors:   Olczak, A.,  Glowka, M.L.,  Szczesio, M.,  Bojarska, J.,  Duax, W.L.,  Burkhart, B.M.,  Wawrzak, Z.

    Deposition:   2006-07-26
    Release:   2007-01-23
    Last Modified (REVDAT):   2011-07-20
     
  •   Revision History    Hide
    Mouse over text for details
    2012-12-12
    Other
    2011-07-20
    Other
    2011-07-20
    Biological assembly
    2011-07-20
    Entry title
    2011-07-13
    Atom nomenclature
    2011-07-13
    Binding sites and description
    2011-07-13
    Polymer description
    2011-07-13
    Version format compliance
    2011-07-13
    Linkage
    2011-07-13
    Sequence database correspondence
    2011-07-13
    Function and keywords
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
    N/A
    Resolution[Å]:   0.80
    R-Value: 0.111 (obs.)
    R-Free: 0.122
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 30.14 α = 90.00 
    b = 31.32 β = 90.00 
    c = 51.55 γ = 90.00