2IVT

CRYSTAL STRUCTURE OF PHOSPHORYLATED RET TYROSINE KINASE DOMAIN

Structural Biology Knowledgebase: 2IVT SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.184

Literature

Macromolecules
Sequence Display for 2IVT

Classification: TRANSFERASE

Total Structure Weight: 36227.77

Macromolecule Entities
Molecule Chains Length Organism Details
PROTO-ONCOGENE TYROSINE-PROTEIN KINASE RECEPTOR RET PRECURSOR A 314 Homo sapiens EC#: 2.7.10.1 IUBMB
Fragment: TYROSINE KINASE DOMAIN, RESIDUES 705-1013
Details: PTR AT 905
Gene Name(s): RET Gene View CDHF12 CDHR16 PTC RET51
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AMP
Query on AMP

A ADENOSINE MONOPHOSPHATE
C10 H14 N5 O7 P
UDMBCSSLTHHNCD-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FMT
Query on FMT

A FORMIC ACID
C H2 O2
BDAGIHXWWSANSR-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
PTR
Query on PTR
A L-PEPTIDE LINKING C9 H12 N O6 P TYR

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.184
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 72.13 α = 90.00
b = 70.85 β = 101.13
c = 78.92 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-06-16
  • Released Date: 2006-08-14
  • Deposition author(s): Knowles, P.P., Murray-Rust, J., Mcdonald, N.Q.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4