Crystal structure of a predicted human GTPase in complex with GDP
Wang, J., Shen, Y., Tempel, W., Landry, R., Arrowsmith, C.H., Edwards, A.M., Sundstrom, M., Weigelt, J., Bochkarev, A., Park, H.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Rab12 | 192 | Homo sapiens | Mutation(s): 0  Gene Names: Rab12 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q6IQ22 (Homo sapiens) Explore Q6IQ22  Go to UniProtKB:  Q6IQ22 | |||||
PHAROS:  Q6IQ22 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q6IQ22 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
GDP Query on GDP | D [auth A] | GUANOSINE-5'-DIPHOSPHATE C10 H15 N5 O11 P2 QGWNDRXFNXRZMB-UUOKFMHZSA-N | |||
CA Query on CA | C [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N | |||
MG Query on MG | B [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N | |||
UNX Query on UNX | E [auth A] F [auth A] G [auth A] H [auth A] I [auth A] | UNKNOWN ATOM OR ION X |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 45.463 | α = 90 |
b = 45.463 | β = 90 |
c = 315.454 | γ = 120 |
Software Name | Purpose |
---|---|
DENZO | data reduction |
SCALEPACK | data scaling |
PHASER | phasing |
PDB_EXTRACT | data extraction |
HKL-2000 | data scaling |
REFMAC | refinement |
ARP/wARP | model building |
MolProbity | model building |
Coot | model building |