2ICX

Crystal Structure of a Putative UDP-glucose Pyrophosphorylase from Arabidopsis Thaliana with Bound UTP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.192

Literature

Macromolecules
Sequence Display for 2ICX

Classification: TRANSFERASE

Total Structure Weight: 104555.80

Macromolecule Entities
Molecule Chains Length Organism Details
Probable UTP-glucose-1-phosphate uridylyltransferase 2 A, B 469 Arabidopsis thaliana EC#: 2.7.7.9 IUBMB
Gene Name(s): At3g03250 T17B22.6
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
UTP
Query on UTP

A, B URIDINE 5'-TRIPHOSPHATE
C9 H15 N2 O15 P3
PGAVKCOVUIYSFO-XVFCMESISA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DMS
Query on DMS

A DIMETHYL SULFOXIDE
C2 H6 O S
IAZDPXIOMUYVGZ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.192
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 187.68 α = 90.00
b = 59.68 β = 100.38
c = 89.81 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-09-13
  • Released Date: 2006-09-26
  • Deposition author(s): McCoy, J.G., Wesenberg, G.E., Phillips Jr., G.N., Bitto, E., Bingman, C.A., Center for Eukaryotic Structural Genomics (CESG)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4