2ICE

CRIg bound to C3c

Structural Biology Knowledgebase: 2ICE SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.295
  • R-Value Work: 0.236

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2ICE

Classification: Immune System

Total Structure Weight: 296167.16

Macromolecule Entities
Molecule Chains Length Organism Details
Complement C3 beta chain A, D 642 Homo sapiens Gene Name(s): C3 Gene View CPAMD1
Complement C3 alpha chain B, E 206 Homo sapiens Gene Name(s): C3 Gene View CPAMD1
Complement C3 alpha chain C, F 343 Homo sapiens Gene Name(s): C3 Gene View CPAMD1
V-set and immunoglobulin domain-containing protein 4 S, T 119 Homo sapiens Gene Name(s): VSIG4 Gene View CRIg Z39IG UNQ317/PRO362

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, D CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.295
  • R-Value Work: 0.236
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 384.94 α = 90.00
b = 65.21 β = 102.91
c = 147.68 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-09-12
  • Released Date: 2006-11-07
  • Deposition author(s): Wiesmann, C.

Revision History

  • 2012-09-05
    Type: Biological assembly | Details: Add missing polymer to biological assembly
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4