2HV8

Crystal structure of GTP-bound Rab11 in complex with FIP3


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.86 Å
  • R-Value Free: 0.237
  • R-Value Work: 0.203

Literature

Macromolecules
Sequence Display for 2HV8

Classification: PROTEIN TRANSPORT

Total Structure Weight: 81820.52

Macromolecule Entities
Molecule Chains Length Organism Details
Ras-related protein Rab-11A A, B, C 172 Homo sapiens Fragment: GTPase domain
Mutation: Q70L
Gene Name(s): RAB11A Gene View RAB11
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Rab11 family-interacting protein 3 D, E, F 64 Homo sapiens Fragment: C-terminal region
Gene Name(s): RAB11FIP3 Gene View ARFO1 KIAA0665
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GTP
Query on GTP

A, B, C GUANOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O14 P3
XKMLYUALXHKNFT-UUOKFMHZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MES
Query on MES

B 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
C6 H13 N O4 S
SXGZJKUKBWWHRA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B, C SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
2ME
Query on 2ME

B METHOXYETHANE
C3 H8 O
XOBKSJJDNFUZPF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B, C MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.86 Å
  • R-Value Free: 0.237
  • R-Value Work: 0.203
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 218.29 α = 90.00
b = 52.60 β = 105.56
c = 70.68 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-07-27
  • Released Date: 2006-11-21
  • Deposition author(s): Eathiraj, S., Mishra, A., Prekeris, R., Lambright, D.G.

Revision History

  • 2008-05-01
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance