2HCJ

"Trypsin-modified Elongation Factor Tu in complex with tetracycline"

Structural Biology Knowledgebase: 2HCJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.12 Å
  • R-Value Free: 0.234
  • R-Value Work: 0.200

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2HCJ

Classification: TRANSLATION

Total Structure Weight: 41898.98

Macromolecule Entities
Molecule Chains Length Organism Details
Protein chain elongation factor EF-Tu A 37 Escherichia coli Fragment: EF-Tu fragment, residues 8-44
Gene Name(s): tufA b3339 JW3301
Protein chain elongation factor EF-Tu B 335 Escherichia coli Fragment: EF-Tu fragment, residues 59-393
Mutation: C81X, S393G
Gene Name(s): tufA b3339 JW3301

Small Molecules
Ligands 6 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TAC
Query on TAC

B TETRACYCLINE
C22 H24 N2 O8
OFVLGDICTFRJMM-WESIUVDSSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GDP
Query on GDP

A GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GLV
Query on GLV

B GLYOXYLIC ACID
GLYOXALATE, GLYOXYLATE (Synonym)
C2 H2 O3
HHLFWLYXYJOTON-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

B SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CSO
Query on CSO
B L-PEPTIDE LINKING C3 H7 N O3 S CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.12 Å
  • R-Value Free: 0.234
  • R-Value Work: 0.200
  • Space Group: P 43 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 69.11 α = 90.00
b = 69.11 β = 90.00
c = 157.33 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-06-16
  • Released Date: 2006-10-31
  • Deposition author(s): Mui, S., Heffron, S.E., Aorora, A., Abel, K., Bergmann, E., Jurnak, F.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4