2GS6

Crystal Structure of the active EGFR kinase domain in complex with an ATP analog-peptide conjugate

Structural Biology Knowledgebase: 2GS6 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.206

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2GS6

Classification: TRANSFERASE

Total Structure Weight: 39724.22

Macromolecule Entities
Molecule Chains Length Organism Details
Epidermal growth factor receptor A 330 Homo sapiens EC#: 2.7.10.1 IUBMB
Fragment: kinase domain, residues 696-1022
Gene Name(s): EGFR Gene View ERBB ERBB1 HER1
Peptide B 13 synthetic

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
112
Query on 112

B THIOPHOSPHORIC ACID O-((ADENOSYL-PHOSPHO)PHOSPHO)- S-ACETAMIDYL-DIESTER
C12 H19 N6 O13 P3 S
ZAOVTTQZIXCKOL-JJNLEZRASA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.206
  • Space Group: I 2 3
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 144.18 α = 90.00
b = 144.18 β = 90.00
c = 144.18 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-04-25
  • Released Date: 2006-06-20
  • Deposition author(s): Zhang, X., Gureasko, J., Shen, K., Cole, P.A., Kuriyan, J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4