2GQG

X-ray Crystal Structure of Dasatinib (BMS-354825) Bound to Activated ABL Kinase Domain

Structural Biology Knowledgebase: 2GQG SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.208

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2GQG

Classification: TRANSFERASE

Total Structure Weight: 65503.91

Macromolecule Entities
Molecule Chains Length Organism Details
Proto-oncogene tyrosine-protein kinase ABL1 A, B 278 Homo sapiens EC#: 2.7.10.2 IUBMB
Fragment: kinase domain, residues 229-500
Mutation: Y393X
Gene Name(s): ABL1 Gene View ABL JTK7

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1N1
Query on 1N1

A, B N-(2-CHLORO-6-METHYLPHENYL)-2-({6-[4-(2-HYDROXYETHYL)PIPERAZIN- 1-YL]-2-METHYLPYRIMIDIN-4-YL}AMINO)-1,3-THIAZOLE- 5-CARBOXAMIDE
Dasatinib (Synonym)
C22 H26 Cl N7 O2 S
ZBNZXTGUTAYRHI-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
GOL
Query on GOL

B GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
1N1 IC50: <0.2 - 700 nM (99 - 100) BindingDB
Kd: 0.016 - 120 nM (92 - 100) BindingDB

N/A in BindingMoad
N/A in PDBbind
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
PTR
Query on PTR
A, B L-PEPTIDE LINKING C9 H12 N O6 P TYR

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.208
  • Space Group: P 43 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 105.19 α = 90.00
b = 105.19 β = 90.00
c = 111.10 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-04-20
  • Released Date: 2006-11-21
  • Deposition author(s): Klei, H.E.

Revision History

  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4