2GIN

X-ray structure of the wt allene oxide cyclase 2 from arabidopsis thaliana


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.207

Literature

Macromolecules
Sequence Display for 2GIN

Classification: ISOMERASE

Total Structure Weight: 126265.31

Macromolecule Entities
Molecule Chains Length Organism Details
Allene oxide cyclase 2 A, B, C..., D, E, FA, B, C, D, E, F 188 Arabidopsis thaliana EC#: 5.3.99.6 IUBMB
Fragment: Allene oxide cyclase 2
Gene Name(s): AOC2 Gene View At3g25770 K13N2.11 K13N2_9
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A, B, D, F GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

B, D SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.207
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 66.90 α = 90.00
b = 104.20 β = 95.10
c = 86.70 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-03-29
  • Released Date: 2006-11-21
  • Deposition author(s): Hofmann, E., Schaller, F., Zerbe, P.

Revision History

  • Version 1_0: 2006-11-21

    Type: Initial release

  • Version 1_1: 2008-05-01

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Non-polymer description, Version format compliance