2GCU

X-Ray Structure of Gene Product from Arabidopsis Thaliana At1g53580


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.48 Å
  • R-Value Free: 0.204
  • R-Value Work: 0.176

Literature

Macromolecules
Sequence Display for 2GCU

Classification: HYDROLASE

Total Structure Weight: 108986.98

Macromolecule Entities
Molecule Chains Length Organism Details
Putative hydroxyacylglutathione hydrolase 3 A, B, C, D 245 Arabidopsis thaliana EC#: 3.1.2.6 IUBMB
Mutation: C246X
Gene Name(s): GLY3 At1g53580 F22G10.9 T3F20.11
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A, B, C, D 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FE2
Query on FE2

A, B, C, D FE (II) ION
Fe
CWYNVVGOOAEACU-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CSD
Query on CSD
A, B, C, D L-PEPTIDE LINKING C3 H7 N O4 S CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.48 Å
  • R-Value Free: 0.204
  • R-Value Work: 0.176
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 66.61 α = 90.00
b = 64.47 β = 97.83
c = 127.88 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-03-14
  • Released Date: 2006-04-18
  • Deposition author(s): McCoy, J.G., Wesenberg, G.E., Phillips Jr., G.N., Bitto, E., Bingman, C.A., Center for Eukaryotic Structural Genomics (CESG)

Revision History

  • Version 1_0: 2006-04-18

    Type: Initial release

  • Version 1_1: 2008-05-01

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance

  • Version 1_3: 2014-11-12

    Type: Non-polymer description

  • Version 1_4: 2017-10-18

    Type: Refinement description