2G45

Co-crystal structure of znf ubp domain from the deubiquitinating enzyme isopeptidase T (isot) in complex with ubiquitin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.99 Å
  • R-Value Free: 0.268
  • R-Value Work: 0.229

Literature

Macromolecules
Sequence Display for 2G45

Classification: HYDROLASE

Total Structure Weight: 46506.71

Macromolecule Entities
Molecule Chains Length Organism Details
Ubiquitin carboxyl-terminal hydrolase 5 A, D 129 Homo sapiens EC#: 3.4.19.12 IUBMB
Fragment: The ZnF UBP domain of IsoT (residues 163-291)
Gene Name(s): USP5 Gene View ISOT
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ubiquitin B, E 76 Homo sapiens Gene Name(s): UBC Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, D ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.99 Å
  • R-Value Free: 0.268
  • R-Value Work: 0.229
  • Space Group: P 64

Unit Cell:

Length (Å) Angle (°)
a = 68.07 α = 90.00
b = 68.07 β = 90.00
c = 225.35 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-02-21
  • Released Date: 2006-04-04
  • Deposition author(s): Reyes-Turcu, F.E., Horton, J.R., Mullally, J.E., Heroux, A., Cheng, X., Wilkinson, K.D.

Revision History

  • Version 1_0: 2006-04-04

    Type: Initial release

  • Version 1_1: 2008-05-01

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance