2G19

Cellular Oxygen Sensing: Crystal Structure of Hypoxia-Inducible Factor Prolyl Hydroxylase (PHD2)

Structural Biology Knowledgebase: 2G19 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.253
  • R-Value Work: 0.216

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2G19

Classification: OXIDOREDUCTASE

Total Structure Weight: 27977.54

Macromolecule Entities
Molecule Chains Length Organism Details
Egl nine homolog 1 A 244 Homo sapiens EC#: 1.14.11.29 IUBMB
Fragment: CATALYTIC DOMAIN
Gene Name(s): EGLN1 Gene View C1orf12 PNAS-118 PNAS-137
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
4HG
Query on 4HG

A N-[(4-HYDROXY-8-IODOISOQUINOLIN-3-YL)CARBONYL]GLYCINE
C12 H9 I N2 O4
FUMNLXHPILGSLC-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FE2
Query on FE2

A FE (II) ION
Fe
CWYNVVGOOAEACU-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
4HG IC50: 1400 nM (100) BindingDB

N/A in BindingMoad
IC50: 1400 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.253
  • R-Value Work: 0.216
  • Space Group: P 63

Unit Cell:

Length (Å) Angle (°)
a = 110.85 α = 90.00
b = 110.85 β = 90.00
c = 40.38 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-02-14
  • Released Date: 2006-06-13
  • Deposition author(s): Syed, R.S., Li, V.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4