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Structure-based drug design of a novel family of PPAR partial agonists: virtual screening, x-ray crystallography and in vitro/in vivo biological activities
2G0H
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transcription Activator
    Structure Weight: 63065.51
    Molecule: Peroxisome proliferator-activated receptor gamma
    Polymer: 1 Type: protein Length: 271
    Chains: A, B
    Fragment: Ligand binding domain(residues 207-477)
    Organism Homo sapiens
    Gene Names PPARG NR1C3
    UniProtKB:   Protein Feature View | Search PDB | P37231  
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli bl21(de3)  
     
  •   Related PDB Entries Hide
    Identifier Details
    2G0G  the same protein complexed with different ligand 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    SP3
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    SP3 C21 H12 F7 N3 O2 S2
    N-[1-(4-FLUOROPHENYL)-3-(2-THIENYL)-1H-PYRAZOL- 5-YL]-3,5-BIS(TRIFLUOROMETHYL)BENZENESULFONAMIDE
    SP3:2G0H
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    SP3
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    SP3
    IC50: 22.7 nM (100) - data from BindingDB  
    IC50: 22.7 nM - data from BindingMOAD  
    IC50: 22.7 nM - data from PDBbind  
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Lu, I.L.,  Peng, Y.H.,  Huang, C.F.,  Lin, Y.T.,  Hsu, J.T.A.,  Wu, S.Y.

    Deposition:   2006-02-13
    Release:   2006-05-16
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
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    2011-07-13
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  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.30
    R-Value: 0.238 (obs.)
    R-Free: 0.293
    Space Group: P 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 56.30 α = 90.00 
    b = 88.90 β = 90.80 
    c = 58.45 γ = 90.00