2G0A

X-ray structure of mouse pyrimidine 5'-nucleotidase type 1 with lead(II) bound in active site


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.149

Literature

Macromolecules
Sequence Display for 2G0A

Classification: HYDROLASE

Total Structure Weight: 69218.86

Macromolecule Entities
Molecule Chains Length Organism Details
Cytosolic 5'-nucleotidase III A, B 297 Mus musculus EC#: 3.1.3.5 IUBMB
Mutation: M12M, M13M, M52M, M110M, M141M, M192M, M245M, M273M
Gene Name(s): Nt5c3a Nt5c3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EPE
Query on EPE

A, B 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
HEPES (Synonym)
C8 H18 N2 O4 S
JKMHFZQWWAIEOD-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PB
Query on PB

A, B LEAD (II) ION
Pb
RVPVRDXYQKGNMQ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.149
  • Space Group: P 32

Unit Cell:

Length (Å) Angle (°)
a = 134.55 α = 90.00
b = 134.55 β = 90.00
c = 39.23 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-02-11
  • Released Date: 2006-04-04
  • Deposition author(s): Bitto, E., Bingman, C.A., Wesenberg, G.E., Phillips Jr., G.N., Center for Eukaryotic Structural Genomics (CESG)

Revision History

  • Version 1_0: 2006-04-04

    Type: Initial release

  • Version 1_1: 2008-05-01

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Advisory, Version format compliance