2G08

X-ray structure of mouse pyrimidine 5'-nucleotidase type 1, product-transition complex analog with Aluminum fluoride


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.260
  • R-Value Work: 0.190

Literature

Macromolecules
Sequence Display for 2G08

Classification: HYDROLASE

Total Structure Weight: 68544.41

Macromolecule Entities
Molecule Chains Length Organism Details
Cytosolic 5'-nucleotidase III A, B 297 Mus musculus EC#: 3.1.3.5 IUBMB
Mutation: M12M, M13M, M52M, M110M, M141M, M192M, M245M, M273M
Gene Name(s): Nt5c3a Nt5c3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AF3
Query on AF3

A, B ALUMINUM FLUORIDE
Al F3
KLZUFWVZNOTSEM-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.260
  • R-Value Work: 0.190
  • Space Group: P 32

Unit Cell:

Length (Å) Angle (°)
a = 135.04 α = 90.00
b = 135.04 β = 90.00
c = 39.05 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-02-11
  • Released Date: 2006-04-04
  • Deposition author(s): Bitto, E., Bingman, C.A., Wesenberg, G.E., Phillips Jr., G.N., Center for Eukaryotic Structural Genomics (CESG)

Revision History

  • 2008-05-01
    Type: Version format compliance
  • 2011-07-13
    Type: Advisory, Version format compliance