2FVY

High Resolution Glucose Bound Crystal Structure of GGBP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.92 Å
  • R-Value Free: 0.130
  • R-Value Work: 0.110

Literature

Macromolecules
Sequence Display for 2FVY

Classification: TRANSPORT PROTEIN

Total Structure Weight: 33823.01

Macromolecule Entities
Molecule Chains Length Organism Details
D-galactose-binding periplasmic protein A 309 Escherichia coli Gene Name(s): mglB b2150 JW2137
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BGC
Query on BGC

A BETA-D-GLUCOSE
C6 H12 O6
WQZGKKKJIJFFOK-VFUOTHLCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

A ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CO2
Query on CO2

A CARBON DIOXIDE
C O2
CURLTUGMZLYLDI-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.92 Å
  • R-Value Free: 0.130
  • R-Value Work: 0.110
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 119.99 α = 90.00
b = 36.24 β = 124.50
c = 80.10 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-01-31
  • Released Date: 2007-02-06
  • Deposition author(s): Borrok, M.J., Kiessling, L.L., Forest, K.T.

Revision History

  • Version 1_0: 2007-02-06

    Type: Initial release

  • Version 1_1: 2008-05-01

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Atomic model, Version format compliance