2FP7

West Nile Virus NS2B/NS3protease in complex with Bz-Nle-Lys-Arg-Arg-H

Structural Biology Knowledgebase: 2FP7 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.68 Å
  • R-Value Free: 0.219
  • R-Value Work: 0.181

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2FP7

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 25353.68

Macromolecule Entities
Molecule Chains Length Organism Details
Serine protease subunit NS2B A 54 West nile virus Fragment: NS2b
Gene Name(s):
Serine protease NS3 B 172 West nile virus EC#: 3.4.21.91 IUBMB
Fragment: NS3pro
Gene Name(s):
N-benzoyl-L-norleucyl-L-lysyl-N-[(2S)-5-carbamimidamido-1-hydroxypentan-2-yl]-L-argininamide C 5 synthetic

Small Molecules
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_000988 (BEZ,LYS,ARG,NLE,OAR) C N-benzoyl-L-norleucyl-6-ammonio-L-norleucyl-N~5~-[amino(iminio)methyl]-N-[(2S)-5-carbamimidamido-1-hydroxypentan-2-yl]-L-ornithinamide Peptide-like /
Inhibitor
Ligand Explorer Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.68 Å
  • R-Value Free: 0.219
  • R-Value Work: 0.181
  • Space Group: P 65
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 93.43 α = 90.00
b = 93.43 β = 90.00
c = 47.44 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-01-16
  • Released Date: 2006-03-07
  • Deposition author(s): Schiering, N., D'Arcy, A., Erbel, P.

Revision History

  • 2013-02-27
    Type: Other | Details: Add PRD info
  • 2011-11-02
    Type: Polymer description | Details: --
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4