Structure of a microbial glycosphingolipid bound to mouse CD1d DOI:10.2210/pdb2fik/pdb

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Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Immune System Structure Weight: 46248.75 Molecule: T-cell surface glycoprotein CD1d1 Polymer: 1 Type: protein Length: 287 Chains: A Fragment: extracellular domain of CD1d, residues 19-297 Organism Mus musculus Gene Names Cd1d1 Cd1.1 UniProtKB:   Protein Feature View | Search PDB | P11609     Molecule: B(2)-microglobulin Polymer: 2 Type: protein Length: 99 Chains: B Organism Mus musculus Gene Name B2m UniProtKB:   Protein Feature View | Search PDB | P01887         Source Hide Polymer: 1 Scientific Name: Mus musculus   Taxonomy   Common Name: House mouse Expression System: Spodoptera frugiperda   Polymer: 2 Scientific Name: Mus musculus   Taxonomy   Common Name: House mouse Expression System: Spodoptera frugiperda   Polymer: 3 Scientific Name: Synthetic construct   Taxonomy         Related PDB Entries Hide Identifier Details 1CD1  Crystal structure of CD1(Mouse) Antigen Presenting Molecule  1Z5L  Crystal Structure Of A Highly Potent Short-Chain Galactosyl Ceramide Agonist Bound To CD1d  1ZHN  Crystal Structure Of Mouse Cd1D Bound To The Self Ligand Phosphatidylcholine  1ZT4  The Crystal Structure Of Human Cd1D With and Without-Galactosylceramide  2AKR  Structural Basis Of Sulfatide Presentation By Mouse CD1d      Ligand Chemical Component Hide Identifier Formula Name Interactions GSL Search  Download  C38 H73 N O9 (2S,3R)-3-HYDROXY-2-(TETRADECANOYLAMINO)OCTADECYL ALPHA- D-GALACTOPYRANOSIDURONIC ACID   Ligand Explorer NAG Search  Download  C8 H15 N O6 N-ACETYL-D-GLUCOSAMINE   Ligand Explorer PLM Search  Download  C16 H32 O2 PALMITIC ACID   Ligand Explorer     External Domain Annotations Hide SCOP Classification v1.75: 3 Domains - data from SCOP   CATH Classification v3.4.0: 3 Domains - data from CATH   Pfam Classification: 2 Domains - data from Pfam   GO Terms: 40 Terms - data from GO      Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Wu, D.,  Zajonc, D.M. Deposition:   2005-12-29 Release:   2006-03-21 Last Modified (REVDAT):   2011-07-13     Revision History    Hide Mouse over text for details 2011-07-13 Non-polymer description 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   1.80 R-Value: 0.209 (obs.) R-Free: 0.243 Space Group: P 21 21 21 Unit Cell:   Length [Å] Angles [°] a = 42.29 α = 90.00  b = 107.66 β = 90.00  c = 110.70 γ = 90.00      Molecule of the Month Hide Major Histocompatibility Complex T-Cell Receptor