2FID

Crystal Structure of a Bovine Rabex-5 fragment complexed with ubiquitin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.268
  • R-Value Work: 0.212

Literature

Macromolecules
Sequence Display for 2FID

Classification: PROTEIN TURNOVER / ENDOCYTOSIS

Total Structure Weight: 16766.21

Macromolecule Entities
Molecule Chains Length Organism Details
Ubiquitin A 76 Bos taurus Gene Name(s): UBC Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Rab5 GDP/GTP exchange factor B 70 Bos taurus Fragment: A20 zinc finger and inverted ubiquitin interacting motif domains
Gene Name(s): RABGEF1 Gene View RABEX5
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.268
  • R-Value Work: 0.212
  • Space Group: P 61

Unit Cell:

Length (Å) Angle (°)
a = 81.97 α = 90.00
b = 81.97 β = 90.00
c = 54.44 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-12-29
  • Released Date: 2006-02-07
  • Deposition author(s): Lee, S., Hurley, J.H.

Revision History

  • Version 1_0: 2006-02-07

    Type: Initial release

  • Version 1_1: 2008-05-01

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Advisory, Version format compliance