Crystal Structure of AlkB in complex with Fe(II), 2-oxoglutarate, and methylated trinucleotide T-meA-T (air 3 hours) DOI:10.2210/pdb2fdi/pdb   NDB ID: PD0771

2FDI   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Oxidoreductase/dna Structure Weight: 24822.91 Molecule: 5'-D(P*TP*(MA7)P*T)-3' Polymer: 1 Type: dna Length: 3 Chains: B Molecule: Alkylated DNA repair protein alkB Polymer: 2 Type: protein Length: 211 Chains: A EC#: 1.14.11.33    Fragment: residues 12-216 Organism Escherichia coli K-12 Gene Names alkB aidD b2212 JW2200 UniProtKB:   Protein Feature View | Search PDB | P05050         Source Hide Polymer: 1 Scientific Name: Synthetic construct   Taxonomy     Polymer: 2 Scientific Name: Escherichia coli k12   Taxonomy   Expression System: Escherichia coli bl21(de3)       Related PDB Entries Hide Identifier Details 2FD8  The same protein complex but without air exposure  2FDF    2FDG    2FDH    2FDJ    2FDK        Ligand Chemical Component Hide Identifier Formula Name Interactions AKG Search  Download  C5 H6 O5 2-OXOGLUTARIC ACID   Ligand Explorer FE2 Search  Download  Fe FE (II) ION   Ligand Explorer SIN Search  Download  C4 H6 O4 SUCCINIC ACID   Ligand Explorer     Modified Residues Hide Identifier Formula Parent Type MA7 Search  C11 H17 N5 O6 P DA dnaLinking     External Domain Annotations Hide SCOP Classification v1.75: 1 Domain - data from SCOP   CATH Classification v3.4.0: 1 Domain - data from CATH   Pfam Classification: 1 Domain - data from Pfam   GO Terms: 17 Terms - data from GO      Structural Biology Knowledgebase Data Hide   Nucleic Acid Database Hide View the NDB ID associated with this structure: PD0771     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Yu, B.,  Benach, J.,  Edstrom, W.C.,  Gibney, B.R.,  Hunt, J.F.,  Northeast Structural Genomics Consortium Deposition:   2005-12-14 Release:   2006-02-21 Last Modified (REVDAT):   2011-07-13     Revision History    Hide Mouse over text for details 2011-07-13 Non-polymer description 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   1.80 R-Value: 0.195 (work) R-Free: 0.226 Space Group: P 43 Unit Cell:   Length [Å] Angles [°] a = 40.65 α = 90.00  b = 40.66 β = 90.00  c = 117.92 γ = 90.00