2F6X

Crystal Structure of (S)-3-O-Geranylgeranylglyceryl Phosphate Synthase complexed with sn-G1P and MPD


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.188

Literature

Macromolecules
Sequence Display for 2F6X

Classification: TRANSFERASE

Total Structure Weight: 53490.66

Macromolecule Entities
Molecule Chains Length Organism Details
(S)-3-O-Geranylgeranylglyceryl Phosphate Synthase A, B 234 Archaeoglobus fulgidus EC#: 2.5.1.41 IUBMB
Fragment: GGGPS
Gene Name(s): AF_0403
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1GP
Query on 1GP

A, B SN-GLYCEROL-1-PHOSPHATE
C3 H9 O6 P
AWUCVROLDVIAJX-VKHMYHEASA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MPD
Query on MPD

A, B (4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.188
  • Space Group: H 3

Unit Cell:

Length (Å) Angle (°)
a = 95.88 α = 90.00
b = 95.88 β = 90.00
c = 166.30 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-11-29
  • Released Date: 2006-01-24
  • Deposition author(s): Payandeh, J.M.

Revision History

  • 2008-05-01
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance