2F4T

Asite RNA + designer antibiotic

Structural Biology Knowledgebase: 2F4T SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.211

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2F4T

Classification: RNA

Total Structure Weight: 14608.18

Macromolecule Entities
Molecule Chains Length Organism Details
5'-R(*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3' A 21 synthetic A-site RNA
5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3' B 23 synthetic A-site RNA

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AB9
Query on AB9

B (2R)-4-AMINO-N-{(1R,2S,3R,4R,5S)-5-AMINO- 2-{2-[(2-AMINOETHYL)AMINO]ETHOXY}-4-[(2,6- DIAMINO-2,6-DIDEOXY-ALPHA-D-GLUCOPYRANOSYL)OXY]- 3-HYDROXYCYCLOHEXYL}-2-HYDROXYBUTANAMIDE
C20 H43 N7 O8
OGRDTONULPXNRP-HSDDYVLRSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
AB9 N/A in BindingDB
N/A in BindingMoad
Kd: 2200 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.211
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 45.98 α = 90.00
b = 32.93 β = 95.62
c = 46.41 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2005-11-24
  • Released Date: 2006-05-02
  • Deposition author(s): Murray, J.B., Meroueh, S.O., Russell, R.J., Lentzen, G., Haddad, J., Mobashery, S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4