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Asite RNA + designer antibiotic
DOI:10.2210/pdb2f4t/pdb   NDB ID: DR0028
2F4T
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: RNA
    Structure Weight: 14608.18
    Molecule: 5'-R(*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'
    Polymer: 1 Type: rna Length: 21
    Chains: A
    Details: A-site RNA
    Molecule: 5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'
    Polymer: 2 Type: rna Length: 23
    Chains: B
    Details: A-site RNA
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    2F4S   
    2F4U   
    2F4V   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    AB9
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    AB9 C20 H43 N7 O8
    (2R)-4-AMINO-N-{(1R,2S,3R,4R,5S)-5-AMINO- 2-{2-[(2-AMINOETHYL)AMINO]ETHOXY}-4-[(2,6- DIAMINO-2,6-DIDEOXY-ALPHA-D-GLUCOPYRANOSYL)OXY]- 3-HYDROXYCYCLOHEXYL}-2-HYDROXYBUTANAMIDE
    AB9:2F4T
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    AB9
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    AB9
    N/Ain BindingDB
    N/Ain BindingMoad
    Kd: 2200 nM - data from PDBbind  
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: DR0028
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Murray, J.B.,  Meroueh, S.O.,  Russell, R.J.,  Lentzen, G.,  Haddad, J.,  Mobashery, S.

    Deposition:   2005-11-24
    Release:   2006-05-02
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
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    2011-07-13
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  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
    N/A
    Resolution[Å]:   3.00
    R-Value: 0.267 (obs.)
    R-Free: 0.267
    Space Group: P 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 45.98 α = 90.00 
    b = 32.93 β = 95.62 
    c = 46.41 γ = 90.00