2F2G

X-Ray Structure of Gene Product From Arabidopsis Thaliana AT3G16990

Structural Biology Knowledgebase: 2F2G SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.234
  • R-Value Work: 0.170

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2F2G

Classification: PLANT PROTEIN

Total Structure Weight: 51328.40

Macromolecule Entities
Molecule Chains Length Organism Details
SEED MATURATION PROTEIN PM36 HOMOLOG A, B 221 Arabidopsis thaliana EC#: 3.5.1 IUBMB 3.5.99.2 IUBMB
Mutation: M1M, M75M, M123M, M133M, M216M
Gene Name(s): TENA_E At3g16990 K14A17.22 K14A17_11

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HMH
Query on HMH

A, B 4-AMINO-5-HYDROXYMETHYL-2-METHYLPYRIMIDINE
C6 H9 N3 O
VUTBELPREDJDDH-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.234
  • R-Value Work: 0.170
  • Space Group: P 41 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 62.70 α = 90.00
b = 62.70 β = 90.00
c = 287.62 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-11-16
  • Released Date: 2005-12-13
  • Deposition author(s): Wesenberg, G.W., Smith, D.W., Phillips Jr., G.N., Johnson, K.A., Bitto, E., Bingman, C.A., Center for Eukaryotic Structural Genomics (CESG)
  • Previous versions: 1Q4M

Revision History

  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4