2EUF

X-ray structure of human CDK6-Vcyclin in complex with the inhibitor PD0332991

Structural Biology Knowledgebase: 2EUF SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.306
  • R-Value Work: 0.229

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2EUF

Classification: CELL CYCLE / TRANSFERASE

Total Structure Weight: 64356.99

Macromolecule Entities
Molecule Chains Length Organism Details
viral Cyclin A 254 Saimiriine herpesvirus 2 Gene Name(s): 72 ECLF2
Cell division protein kinase 6 B 308 Homo sapiens EC#: 2.7.11.22 IUBMB
Fragment: fragment 1-308
Gene Name(s): CDK6 Gene View CDKN6

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ACT
Query on ACT

B ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer
 
JSmol
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
DMS
Query on DMS

B DIMETHYL SULFOXIDE
C2 H6 O S
IAZDPXIOMUYVGZ-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
LQQ
Query on LQQ

B 6-ACETYL-8-CYCLOPENTYL-5-METHYL-2-[(5-PIPERAZIN- 1-YLPYRIDIN-2-YL)AMINO]PYRIDO[2,3-D]PYRIMIDIN- 7(8H)-ONE
C24 H29 N7 O2
AHJRHEGDXFFMBM-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
LQQ IC50: 16 nM (100) BindingDB

N/A in BindingMoad
IC50: 15 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.306
  • R-Value Work: 0.229
  • Space Group: P 65 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 71.15 α = 90.00
b = 71.15 β = 90.00
c = 446.88 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-10-28
  • Released Date: 2006-07-04
  • Deposition author(s): Schulze-Gahmen, U., Lu, H.

Revision History

  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4