Crystal structure of the complex of goat lactoperoxidase with Nitrate at 3.25 A resolution
Singh, A.K., Prem kumar, R., Singh, N., Sharma, S., Singh, S.B., Bhushan, A., Kaur, P., Singh, T.P.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Lactoperoxidase | 595 | Capra hircus | Mutation(s): 0  EC: 1.11.1.7 | ||
UniProt | |||||
Find proteins for A0A452E9Y6 (Capra hircus) Explore A0A452E9Y6  Go to UniProtKB:  A0A452E9Y6 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A452E9Y6 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | C, D, G | 3 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G62182OO GlyCosmos:  G62182OO GlyGen:  G62182OO |
Entity ID: 3 | |||||
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Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | E, H, I | 3 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G15407YE GlyCosmos:  G15407YE GlyGen:  G15407YE |
Ligands 7 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
HEM Query on HEM | Q [auth A], V [auth B] | PROTOPORPHYRIN IX CONTAINING FE C34 H32 Fe N4 O4 KABFMIBPWCXCRK-RGGAHWMASA-L | |||
OSM Query on OSM | W [auth B] | 1-(OXIDOSULFANYL)METHANAMINE C H5 N O S KONFWJXIYYGXOO-UHFFFAOYSA-N | |||
NO3 Query on NO3 | K [auth A], L [auth A], R [auth B], S [auth B] | NITRATE ION N O3 NHNBFGGVMKEFGY-UHFFFAOYSA-N | |||
CO3 Query on CO3 | M [auth A], T [auth B] | CARBONATE ION C O3 BVKZGUZCCUSVTD-UHFFFAOYSA-L | |||
SCN Query on SCN | P [auth A] | THIOCYANATE ION C N S ZMZDMBWJUHKJPS-UHFFFAOYSA-M | |||
CA Query on CA | N [auth A], U [auth B] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N | |||
CYN Query on CYN | O [auth A] | CYANIDE ION C N XFXPMWWXUTWYJX-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 58.522 | α = 85.3 |
b = 72.537 | β = 84.06 |
c = 83.983 | γ = 75.68 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
AUTOMAR | data reduction |
SCALEPACK | data scaling |
AMoRE | phasing |