2E92

S. cerevisiae geranylgeranyl pyrophosphate synthase in complex with magnesium and BPH-261


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.31 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.199

Literature

Macromolecules
Sequence Display for 2E92

Classification: TRANSFERASE

Total Structure Weight: 79339.63

Macromolecule Entities
Molecule Chains Length Organism Details
Geranylgeranyl pyrophosphate synthetase A, B 340 Saccharomyces cerevisiae Gene Name(s): BTS1 YPL069C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
M0N
Query on M0N

A, B (1-HYDROXY-2-IMIDAZO[1,2-A]PYRIDIN-3-YLETHANE- 1,1-DIYL)BIS(PHOSPHONIC ACID)
6, (Synonym)
C9 H12 N2 O7 P2
VMMKGHQPQIEGSQ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
M0N IC50: 340 nM (100) BindingDB
Ki: 130 nM (100) BindingDB

N/A in BindingMoad
Ki: 130 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.31 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.199
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 46.87 α = 90.00
b = 116.05 β = 90.00
c = 127.73 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-01-24
  • Released Date: 2007-06-12
  • Deposition author(s): Guo, R.T., Ko, T.P., Cao, R., Jeng, W.Y., Chen, C.K.-M., Chang, T.H., Liang, P.H., Oldfield, E., Wang, A.H.-J.

Revision History

  • Version 1_0: 2007-06-12

    Type: Initial release

  • Version 1_1: 2008-04-30

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance