2E6X

X-ray structure of TT1592 from Thermus thermophilus HB8

PDB DOI: https://doi.org/10.2210/pdb2E6X/pdb

Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Organism(s): Thermus thermophilus HB8
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2007-01-05 Released: 2007-12-18
Deposition Author(s): Yamada, M., Nakagawa, N., Kanagawa, M., Kuramitsu, S., Kamitori, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.253
R-Value Work: 0.214
R-Value Observed: 0.214

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

X-ray structure of TT1592 from Thermus thermophilus HB8

Yamada, M., Nakagawa, N., Kanagawa, M., Kuramitsu, S., Kamitori, S.

To be published.

Macromolecule Content

Total Structure Weight: 33.16 kDa
Atom Count: 2,350
Modelled Residue Count: 264
Deposited Residue Count: 276
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hypothetical protein TTHA1281	A, B, C, D	69	Thermus thermophilus HB8	Mutation(s): 0 Gene Names: tt1592
UniProt
Find proteins for Q5SIT3 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SIT3 Go to UniProtKB: Q5SIT3
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q5SIT3
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B, C, D	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.253
R-Value Work: 0.214
R-Value Observed: 0.214
Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 96.486	α = 90
b = 56.051	β = 93.48
c = 48.885	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
Rapid_auto_Sp8	data collection
HKL-2000	data reduction
HKL-2000	data scaling
SOLVE	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2007-12-18

Deposition Author(s):

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2007-12-18
Type: Initial release
Version 1.1: 2011-07-13
Changes: Source and taxonomy, Version format compliance

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.