RNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dGTP
DOI:10.2210/pdb2e2i/pdb   NDB ID: PH0029
2E2I
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transcription , Transferase/dna RNA Hybrid
    Structure Weight: 486744.09
    Molecule: 5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3'
    Polymer: 1 Type: rna Length: 10
    Chains: R
    Molecule: 28-MER DNA template strand
    Polymer: 2 Type: dna Length: 28
    Chains: T
    Molecule: 5'-D(*CP*TP*GP*CP*TP*TP*AP*TP*CP*GP*GP*TP*AP*G)-3'
    Polymer: 3 Type: dna Length: 14
    Chains: N
    Molecule: DNA-directed RNA polymerase II largest subunit
    Polymer: 4 Type: protein Length: 1733
    Chains: A
    EC#: 2.7.7.6   
    Organism: Saccharomyces cerevisiae
    Gene Names: RPO21 RPB1 RPB220 SUA8 YDL140C D2150
    UniProtKB: Protein Feature View | Search PDB | P04050  
    Molecule: DNA-directed RNA polymerase II 140 kDa polypeptide
    Polymer: 5 Type: protein Length: 1224
    Chains: B
    EC#: 2.7.7.6   
    Organism: Saccharomyces cerevisiae
    Gene Names: RPB2 RPB150 RPO22 YOR151C
    UniProtKB: Protein Feature View | Search PDB | P08518  
    Molecule: DNA-directed RNA polymerase II 45 kDa polypeptide
    Polymer: 6 Type: protein Length: 318
    Chains: C
    EC#: 2.7.7.6   
    Organism: Saccharomyces cerevisiae
    Gene Names: RPB3 YIL021W
    UniProtKB: Protein Feature View | Search PDB | P16370  
    Molecule: DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide
    Polymer: 7 Type: protein Length: 215
    Chains: E
    EC#: 2.7.7.6   
    Organism: Saccharomyces cerevisiae
    Molecule: DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide
    Polymer: 8 Type: protein Length: 155
    Chains: F
    EC#: 2.7.7.6   
    Organism: Saccharomyces cerevisiae
    Gene Names: RPO26 RPB6 YPR187W P9677.8
    UniProtKB: Protein Feature View | Search PDB | P20435  
    Molecule: DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide
    Polymer: 9 Type: protein Length: 146
    Chains: H
    EC#: 2.7.7.6   
    Organism: Saccharomyces cerevisiae
    Gene Names: RPB8 YOR224C YOR50-14
    UniProtKB: Protein Feature View | Search PDB | P20436  
    Molecule: DNA-directed RNA polymerase II subunit 9
    Polymer: 10 Type: protein Length: 122
    Chains: I
    EC#: 2.7.7.6   
    Organism: Saccharomyces cerevisiae
    Gene Names: RPB9 YGL070C
    UniProtKB: Protein Feature View | Search PDB | P27999  
    Molecule: DNA-directed RNA polymerases I/II/III subunit 10
    Polymer: 11 Type: protein Length: 70
    Chains: J
    EC#: 2.7.7.6   
    Organism: Saccharomyces cerevisiae
    Gene Names: RPB10 YOR210W
    UniProtKB: Protein Feature View | Search PDB | P22139  
    Molecule: DNA-directed RNA polymerase II 13.6 kDa polypeptide
    Polymer: 12 Type: protein Length: 120
    Chains: K
    EC#: 2.7.7.6   
    Organism: Saccharomyces cerevisiae
    Gene Names: RPB11 YOL005C
    UniProtKB: Protein Feature View | Search PDB | P38902  
    Molecule: DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide
    Polymer: 13 Type: protein Length: 70
    Chains: L
    EC#: 2.7.7.6   
    Organism: Saccharomyces cerevisiae
    Gene Names: RPC10 RPB12 YHR143W-A YHR143BW
    UniProtKB: Protein Feature View | Search PDB | P40422  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 4
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast  
    Polymer: 5
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast  
    Polymer: 6
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast  
    Polymer: 7
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast  
    Polymer: 8
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast  
    Polymer: 9
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast  
    Polymer: 10
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast  
    Polymer: 11
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast  
    Polymer: 12
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast  
    Polymer: 13
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast  
     
  •   Related PDB Entries Hide
    Identifier Details
    1R9S    
    1R9T    
    1SFO    
    2E2H    
    2E2J    
    2NVQ    
    2NVS    
    2NVT    
    2NVX    
    2NVY    
    2NVZ    
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    DGT
    Search 
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    DGT C10 H16 N5 O13 P3
    2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE
    MG
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    MG Mg
    MAGNESIUM ION
    ZN
    Search 
    Download 
    ZN Zn
    ZINC ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:PH0029
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors
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