2DY4

Crystal structure of RB69 GP43 in complex with DNA containing Thymine Glycol


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.65 Å
  • R-Value Free: 0.281
  • R-Value Work: 0.229

Literature

Macromolecules
Sequence Display for 2DY4

Classification: TRANSFERASE / DNA

Total Structure Weight: 463956.59


Macromolecule Entities
Molecule Chains Length Organism Details
DNA polymerase A, B, C, D 903 Escherichia virus rb69 EC#: 2.7.7.7 IUBMB 3.1.11 IUBMB
Mutation: D222A, D327A
Gene Name(s): 43
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*CP*GP*(CTG)P*GP*GP*AP*AP*TP*GP*A*CP*AP*GP*CP*CP*GP*CP*G)-3' E, G, I, K 18 synthetic
5'-D(*GP*CP*GP*GP*CP*TP*GP*T*CP*AP*TP*TP*CP*CP*A)-3' F, H, J, L 15 synthetic

Small Molecules
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
CTG
Query on CTG
E, G, I, K DNA LINKING C10 H17 N2 O10 P DT
MSE
Query on MSE
A, B, C, D L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.65 Å
  • R-Value Free: 0.281
  • R-Value Work: 0.229
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 132.61 α = 90.00
b = 122.63 β = 96.31
c = 168.70 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-09-06
  • Released Date: 2007-01-09
  • Deposition author(s): Aller, P., Rould, M.A., Hogg, M., Wallace, S.S., Doublie, S.

Revision History

  • 2008-04-30
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance