2DUU

Crystal Structure of apo-form of NADP-Dependent Glyceraldehyde-3-Phosphate Dehydrogenase from Synechococcus Sp.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.217

Literature

Macromolecules
Sequence Display for 2DUU

Classification: OXIDOREDUCTASE

Total Structure Weight: 248879.80

Macromolecule Entities
Molecule Chains Length Organism Details
Glyceraldehyde 3-phosphate dehydrogenase A, B, O..., P, Q, RA, B, O, P, Q, R 380 Synechococcus elongatus Gene Name(s): gap2 Synpcc7942_1742
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B, O, P, Q, R SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.217
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 151.40 α = 90.00
b = 79.80 β = 102.10
c = 207.20 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-07-27
  • Released Date: 2006-09-05
  • Deposition author(s): Kitatani, T., Nakamura, Y., Wada, K., Kinoshita, T., Tamoi, M., Shigeoka, S., Tada, T.

Revision History

  • Version 1_0: 2006-09-05

    Type: Initial release

  • Version 1_1: 2008-04-30

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Derived calculations, Version format compliance