2DEF

PEPTIDE DEFORMYLASE CATALYTIC CORE (RESIDUES 1-147), NMR, 20 STRUCTURES


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 200
  • Conformers Submitted: 20
  • Selection Criteria: Lowest Diana Target Function

Literature

Macromolecules
Sequence Display for 2DEF

Classification: HYDROLASE

Total Structure Weight: 16703.82

Macromolecule Entities
Molecule Chains Length Organism Details
PEPTIDE DEFORMYLASE A 147 Escherichia coli EC#: 3.5.1.88 IUBMB
Fragment: ACTIVE CATALYTIC CORE, RESIDUES 1 - 147
Details: ACTIVE FORM CONTAINING ONE NICKEL ION IN THE METAL BINDING SITE
Gene Name(s): def fms b3287 JW3248
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NI
Query on NI

A NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 200
  • Conformers Submitted: 20
  • Selection Criteria: LOWEST DIANA TARGET FUNCTION

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1997-12-15
  • Released Date: 1998-03-18
  • Deposition author(s): Meinnel, T., Dardel, F.

Revision History

  • 2008-03-24
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance