2D55

Structural, physical and biological characteristics of RNA.DNA binding agent N8-actinomycin D


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Observed: 0.190

Literature

Macromolecules
Sequence Display for 2D55

Classification: DNA / ANTIBIOTIC

Total Structure Weight: 6112.68


Macromolecule Entities
Molecule Chains Length Organism Details
ACTINOMYCIN D C 11 Streptomyces antibioticus
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*GP*AP*AP*GP*CP*TP*TP*C)-3') A, B 8 synthetic

Small Molecules
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_000001
Query on PRD_000001
C Actinomycin D Polypeptide /
Antibiotic
Ligand Explorer Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Observed: 0.190
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 51.37 α = 90.00
b = 62.09 β = 113.80
c = 25.04 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1995-05-01
  • Released Date: 1995-10-15
  • Deposition author(s): Shinomiya, M., Chu, W., Carlson, R.G., Weaver, R.F., Takusagawa, F.
  • Previous versions: 1D55

Revision History

  • Version 1_0: 1995-10-15

    Type: Initial release

  • Version 1_1: 2011-06-14

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance

  • Version 1_3: 2011-07-27

    Type: Atomic model, Database references, Derived calculations, Non-polymer description, Structure summary

  • Version 1_4: 2012-12-12

    Type: Other