2D4Q

Crystal structure of the Sec-PH domain of the human neurofibromatosis type 1 protein


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.280
  • R-Value Work: 0.240

Literature

Macromolecules
Sequence Display for 2D4Q

Classification: SIGNALING PROTEIN

Total Structure Weight: 60565.13

Macromolecule Entities
Molecule Chains Length Organism Details
Neurofibromin A, B 257 Homo sapiens Fragment: Sec14 homology domain
Gene Name(s): NF1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
OXN
Query on OXN

A, B OXTOXYNOL-10
1, (Synonym)
C34 H62 O11
IVKNZCBNXPYYKL-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
POP
Query on POP

B PYROPHOSPHATE 2-
H2 O7 P2
XPPKVPWEQAFLFU-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.280
  • R-Value Work: 0.240
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 113.50 α = 90.00
b = 113.50 β = 90.00
c = 125.60 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-10-22
  • Released Date: 2006-03-07
  • Deposition author(s): D'angelo, I., Welti, S., Bonneau, F., Scheffzek, K.

Revision History

  • 2008-04-30
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance