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Wild Type Photoactive Yellow Protein, P65 Form
2D01
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Signaling Protein
    Structure Weight: 14052.86
    Molecule: Photoactive yellow protein
    Polymer: 1 Type: protein Length: 125
    Chains: A
    Organism: Halorhodospira halophila
    Gene Name: pyp
    UniProtKB: Protein Feature View | Search PDB | P16113  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Halorhodospira halophila   Taxonomy   Expression System: Escherichia coli bl21(de3)  
     
  •   Related PDB Entries Hide
    Identifier Details
    2D02  PYP(R52Q), P65 Form 
    2PHY  another crystal form of PYP 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    HC4
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    HC4 C9 H8 O3
    4'-HYDROXYCINNAMIC ACID
    HC4:2D01
     
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  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Shimizu, N.,  Kamikubo, H.,  Yamazaki, Y.,  Imamoto, Y.,  Kataoka, M.

    Deposition:   2005-07-21
    Release:   2006-04-04
    Last Modified (REVDAT):   2009-02-24
     
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    2011-07-13
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  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.34
    R-Value: 0.154 (obs.)
    R-Free: 0.189
    Space Group: P 65
    Unit Cell:
      Length [Å] Angles [°]
    a = 40.42 α = 90.00 
    b = 40.42 β = 90.00 
    c = 118.13 γ = 120.00