2BZH

CRYSTAL STRUCTURE OF THE HUMAN PIM1 IN COMPLEX WITH A RUTHENIUM ORGANOMETALLIC LIGAND RU1

Structural Biology Knowledgebase: 2BZH SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.190
  • R-Value Work: 0.157

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2BZH

Classification: TRANSFERASE

Total Structure Weight: 36210.86

Macromolecule Entities
Molecule Chains Length Organism Details
PROTO-ONCOGENE SERINE THREONINE PROTEIN KINASE PIM1 B 313 Homo sapiens EC#: 2.7.11.1 IUBMB
Mutation: R250G
Details: ISOFORM MUTATION R250G
Gene Name(s): PIM1 Gene View

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HB1
Query on HB1

B RUTHENIUM-PYRIDOCARBAZOLE-1
C23 H13 N3 O3 Ru
HQDDSWVENMEGOZ-YLWOWRACCN
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

B 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.190
  • R-Value Work: 0.157
  • Space Group: P 65
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 97.53 α = 90.00
b = 97.53 β = 90.00
c = 80.73 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-08-18
  • Released Date: 2005-12-08
  • Deposition author(s): Debreczeni, J.E., Bullock, A., Knapp, S., Von Delft, F., Sundstrom, M., Arrowsmith, C., Weigelt, J., Edwards, A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: Compliance with PDBx exchange dictionary V4
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor