2BWJ

STRUCTURE OF ADENYLATE KINASE 5

Structural Biology Knowledgebase: 2BWJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.213
  • R-Value Work: 0.172

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2BWJ

Classification: TRANSFERASE

Total Structure Weight: 134951.48

Macromolecule Entities
Molecule Chains Length Organism Details
ADENYLATE KINASE 5 A, B, C..., D, E, FA, B, C, D, E, F 199 Homo sapiens EC#: 2.7.4.3 IUBMB
Mutation: R135M
Gene Name(s): AK5 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AMP
Query on AMP

B, C, F ADENOSINE MONOPHOSPHATE
C10 H14 N5 O7 P
UDMBCSSLTHHNCD-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B, C, D, E, F SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B, E, F CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.213
  • R-Value Work: 0.172
  • Space Group: P 61
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 180.38 α = 90.00
b = 180.38 β = 90.00
c = 121.70 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-07-14
  • Released Date: 2005-07-21
  • Deposition author(s): Bunkoczi, G., Filippakopoulos, P., Fedorov, O., Jansson, A., Longman, E., Ugochukwu, E., Knapp, S., Von Delft, F., Arrowsmith, C., Edwards, A., Sundstrom, M., Weigelt, J.

Revision History

  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor
  • 2011-07-13
    Type: Refinement description | Details: Fixed TLS group
  • 2011-07-13
    Type: Version format compliance | Details: Compliance with PDBx exchange dictionary V4