2BRK

CRYSTAL STRUCTURE OF HEPATITIS C VIRUS POLYMERASE IN COMPLEX WITH AN ALLOSTERIC INHIBITOR (COMPOUND 1)

Structural Biology Knowledgebase: 2BRK SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.184

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2BRK

Classification: TRANSFERASE

Total Structure Weight: 60198.52

Macromolecule Entities
Molecule Chains Length Organism Details
RNA-DIRECTED RNA POLYMERASE A 536 Hepatitis c virus EC#: 2.7.7.48 IUBMB
Fragment: NS5B CATALYTIC DOMAIN, RESIDUES 2420-2955

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CMF
Query on CMF

A 3-CYCLOHEXYL-1-(2-MORPHOLIN-4-YL-2-OXOETHYL)- 2-PHENYL-1H-INDOLE-6-CARBOXYLIC ACID
C27 H30 N2 O4
ZKEZEXYKYHYIMQ-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
MN
Query on MN

A MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
CMF EC50: 0.8 nM (88) BindingDB
IC50: 26 nM (88) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.184
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 68.00 α = 90.00
b = 94.49 β = 90.00
c = 95.73 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-05-06
  • Released Date: 2005-06-14
  • Deposition author(s): Di Marco, S., Volpari, C., Carfi, A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4