50S ribosomal subunit from a crystal structure of the ribosome in complex with tRNAs and mRNA with a stop codon in the A-site. This file contains the 50S subunit from a crystal structure of the ribosome in complex with tRNAs and mRNA with a stop codon in the A-site and is described in remark 400. DOI:10.2210/pdb2b9p/pdb   NDB ID: RR0133

2B9P   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Split Entry The asymmetric unit for this structure is composed of multiple PDB entries: 2B9O   2B9P     Download All Files      Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Ribosome Structure Weight: 1399029.80 Molecule: 5S ribosomal RNA Polymer: 1 Type: rna Length: 123 Chains: B Organism Thermus thermophilus Molecule: 23S ribosomal RNA Polymer: 2 Type: rna Length: 2916 Chains: A Organism Thermus thermophilus HB8 Molecule: 50S ribosomal protein L2 Polymer: 3 Type: protein Length: 173 Chains: D Organism Thermus thermophilus Molecule: 50S ribosomal protein L3 Polymer: 4 Type: protein Length: 338 Chains: E Organism Thermus thermophilus Molecule: 50S ribosomal protein L4 Polymer: 5 Type: protein Length: 246 Chains: F Organism Thermus thermophilus Molecule: 50S ribosomal protein L5 Polymer: 6 Type: protein Length: 176 Chains: G Organism Thermus thermophilus Molecule: 50S ribosomal protein L6 Polymer: 7 Type: protein Length: 177 Chains: H Organism Thermus thermophilus Molecule: 50S ribosomal protein L9 Polymer: 8 Type: protein Length: 149 Chains: I Organism Thermus thermophilus Molecule: 50S ribosomal protein L13 Polymer: 9 Type: protein Length: 145 Chains: N Organism Thermus thermophilus Molecule: 50S ribosomal protein L14 Polymer: 10 Type: protein Length: 122 Chains: O Organism Thermus thermophilus Molecule: 50S ribosomal protein L15 Polymer: 11 Type: protein Length: 164 Chains: P Organism Thermus thermophilus Molecule: 50S ribosomal protein L16 Polymer: 12 Type: protein Length: 138 Chains: Q Organism Thermus thermophilus Molecule: 50S ribosomal protein L18 Polymer: 13 Type: protein Length: 186 Chains: S Organism Thermus thermophilus Molecule: 50S ribosomal protein L19 Polymer: 14 Type: protein Length: 66 Chains: T Organism Thermus thermophilus Molecule: 50S ribosomal protein L22 Polymer: 15 Type: protein Length: 113 Chains: W Organism Thermus thermophilus Gene Names rplV TTHA1687 UniProtKB:   Protein Feature View | Search PDB | Q5SHP3     Molecule: 50S ribosomal protein L23 Polymer: 16 Type: protein Length: 84 Chains: X Organism Thermus thermophilus Molecule: 50S ribosomal protein 24 Polymer: 17 Type: protein Length: 119 Chains: Y Organism Thermus thermophilus Molecule: 50S ribosomal protein CTC Polymer: 18 Type: protein Length: 253 Chains: Z Organism Thermus thermophilus Molecule: 50S ribosomal protein L17 Polymer: 19 Type: protein Length: 118 Chains: R Organism Thermus thermophilus Gene Names rplQ rpl17 TTHA1663 UniProtKB:   Protein Feature View | Search PDB | Q9Z9H5     Molecule: 50S ribosomal protein L20 Polymer: 20 Type: protein Length: 118 Chains: U Organism Thermus thermophilus Molecule: 50S ribosomal protein L21 Polymer: 21 Type: protein Length: 100 Chains: V Organism Thermus thermophilus Molecule: 50S ribosomal protein L29 Polymer: 22 Type: protein Length: 70 Chains: 2 Organism Thermus thermophilus Molecule: 50S ribosomal protein L30 Polymer: 23 Type: protein Length: 60 Chains: 3 Organism Thermus thermophilus Gene Names rpmD TTHA1674 UniProtKB:   Protein Feature View | Search PDB | Q5SHQ6     Molecule: 50S ribosomal protein L27 Polymer: 24 Type: protein Length: 91 Chains: 0 Organism Thermus thermophilus Molecule: 50S ribosomal protein L31 Polymer: 25 Type: protein Length: 73 Chains: 4 Organism Thermus thermophilus Molecule: 50S ribosomal protein L32 Polymer: 26 Type: protein Length: 60 Chains: 5 Organism Thermus thermophilus Molecule: 50S ribosomal protein L33 Polymer: 27 Type: protein Length: 82 Chains: 6 Organism Thermus thermophilus Molecule: 50S ribosomal protein L34 Polymer: 28 Type: protein Length: 47 Chains: 7 Organism Thermus thermophilus Molecule: 50S ribosomal protein L35 Polymer: 29 Type: protein Length: 64 Chains: 8 Organism Thermus thermophilus Molecule: 50S ribosomal protein L36 Polymer: 30 Type: protein Length: 36 Chains: 9 Organism Thermus thermophilus Molecule: 50S ribosomal protein L11 Polymer: 31 Type: protein Length: 141 Chains: K Organism Thermus thermophilus     Source Hide Polymer: 1 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 2 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 3 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 4 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 5 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 6 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 7 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 8 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 9 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 10 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 11 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 12 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 13 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 14 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 15 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 16 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 17 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 18 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 19 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 20 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 21 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 22 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 23 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 24 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 25 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 26 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 27 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 28 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 29 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 30 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 31 Scientific Name: Thermus thermophilus   Taxonomy         Related PDB Entries Hide Identifier Details 2B64  30S ribosomal subunit, tRNAs, mRNA and release factor RF1 from a crystal structure of the whole ribosomal complex  2B66  50S ribosomal subunit from a crystal structure of release factor RF1, tRNAs and mRNA bound to the ribosome  2B9M  30S ribosomal subunit, tRNAs, mRNA and release factor RF2 from a crystal structure of the whole ribosomal complex  2B9N  50S ribosomal subunit from a crystal structure of release factor RF2, tRNAs and mRNA bound to the ribosome  2B9O  30S ribosomal subunit, tRNAs and mRNA from a crystal structure of the whole ribosomal complex with a stop codon in the A-site      External Domain Annotations Hide SCOP Classification v1.75: 24 Domains - data from SCOP   Pfam Classification: 35 Domains - data from Pfam   GO Terms: 18 Terms - data from GO      Structural Biology Knowledgebase Data Hide   Nucleic Acid Database Hide View the NDB ID associated with this structure: RR0133     Data in orange boxes are gathered from external resources (when available). 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Biological Assembly            View in 3D More Images... Composite of PDB entries (2B9O and 2B9P)         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Petry, S.,  Brodersen, D.E.,  Murphy IV, F.V.,  Dunham, C.M.,  Selmer, M.,  Tarry, M.J.,  Kelley, A.C.,  Ramakrishnan, V. Deposition:   2005-10-12 Release:   2006-01-10 Last Modified (REVDAT):   2011-07-13     Revision History    Hide Mouse over text for details 2011-07-13 Source and taxonomy 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors Resolution[Å]:   6.46 R-Value: 0.356 (obs.) R-Free: 0.361 Space Group: P 43 21 2 Unit Cell:   Length [Å] Angles [°] a = 517.41 α = 90.00  b = 517.41 β = 90.00  c = 365.39 γ = 90.00      Molecule of the Month Hide Ribosomal Subunits Ribosome Transfer-Messenger RNA Ricin