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50S ribosomal subunit from a crystal structure of release factor RF2, tRNAs and mRNA bound to the ribosome. This file contains the 50S subunit from a crystal structure of release factor RF1, tRNAs and mRNA bound to the ribosome and is described in remark 400.
DOI:10.2210/pdb2b9n/pdb   NDB ID: RR0131
2B9N
Split Entry
The asymmetric unit for this structure is composed of multiple PDB entries:
2B9M   2B9N  
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The complete entry has been assigned PDB ID 4V4S and is available for download in PDBx/mmCIF and PDBML/XML formats from the FTP archive at:
ftp://ftp.wwpdb.org/pub/pdb/data/large_structures/mmCIF/4v4s.cif.gz
ftp://ftp.wwpdb.org/pub/pdb/data/large_structures/XML/4v4s.xml.gz
 
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Ribosome
    Structure Weight: 1399029.80
    Molecule: 5S ribosomal RNA
    Polymer: 1 Type: rna Length: 123
    Chains: B
    Organism: Thermus thermophilus
    Molecule: 23S ribosomal RNA
    Polymer: 2 Type: rna Length: 2916
    Chains: A
    Organism: Thermus thermophilus HB8
    Molecule: 50S ribosomal protein L2
    Polymer: 3 Type: protein Length: 173
    Chains: D
    Organism: Thermus thermophilus
    Gene Name: rplB
    UniProtKB: Protein Feature View | Search PDB | P04257  
    Molecule: 50S ribosomal protein L3
    Polymer: 4 Type: protein Length: 338
    Chains: E
    Organism: Thermus thermophilus
    Molecule: 50S ribosomal protein L4
    Polymer: 5 Type: protein Length: 246
    Chains: F
    Organism: Thermus thermophilus
    Gene Names: rpl4 rrnAC1610
    UniProtKB: Protein Feature View | Search PDB | P12735  
    Molecule: 50S ribosomal protein L5
    Polymer: 6 Type: protein Length: 176
    Chains: G
    Organism: Thermus thermophilus
    Gene Names: rpl5 rrnAC1598
    UniProtKB: Protein Feature View | Search PDB | P14124  
    Molecule: 50S ribosomal protein L6
    Polymer: 7 Type: protein Length: 177
    Chains: H
    Organism: Thermus thermophilus
    Molecule: 50S ribosomal protein L9
    Polymer: 8 Type: protein Length: 149
    Chains: I
    Organism: Thermus thermophilus
    Molecule: 50S ribosomal protein L13
    Polymer: 9 Type: protein Length: 145
    Chains: N
    Organism: Thermus thermophilus
    Gene Names: rpl13 rrnAC0065
    UniProtKB: Protein Feature View | Search PDB | P29198  
    Molecule: 50S ribosomal protein L14
    Polymer: 10 Type: protein Length: 122
    Chains: O
    Organism: Thermus thermophilus
    Molecule: 50S ribosomal protein L15
    Polymer: 11 Type: protein Length: 164
    Chains: P
    Organism: Thermus thermophilus
    Gene Names: rpl15p rrnAC1590
    UniProtKB: Protein Feature View | Search PDB | P12737  
    Molecule: 50S ribosomal protein L16
    Polymer: 12 Type: protein Length: 138
    Chains: Q
    Organism: Thermus thermophilus
    Molecule: 50S ribosomal protein L18
    Polymer: 13 Type: protein Length: 186
    Chains: S
    Organism: Thermus thermophilus
    Gene Names: rpl18p rrnAC1593
    UniProtKB: Protein Feature View | Search PDB | P14123  
    Molecule: 50S ribosomal protein L19
    Polymer: 14 Type: protein Length: 66
    Chains: T
    Organism: Thermus thermophilus
    Gene Names: rpl24e rrnAC0104
    UniProtKB: Protein Feature View | Search PDB | P14116  
    Molecule: 50S ribosomal protein L22
    Polymer: 15 Type: protein Length: 113
    Chains: W
    Organism: Thermus thermophilus
    Gene Names: rplV TTHA1687
    UniProtKB: Protein Feature View | Search PDB | Q5SHP3  
    Molecule: 50S ribosomal protein L23
    Polymer: 16 Type: protein Length: 84
    Chains: X
    Organism: Thermus thermophilus
    Gene Names: rpl23p rrnAC1609
    UniProtKB: Protein Feature View | Search PDB | P12732  
    Molecule: 50S ribosomal protein 24
    Polymer: 17 Type: protein Length: 119
    Chains: Y
    Organism: Thermus thermophilus
    Molecule: 50S ribosomal protein CTC
    Polymer: 18 Type: protein Length: 253
    Chains: Z
    Organism: Thermus thermophilus
    Gene Names: rplY ctc DR_0427
    UniProtKB: Protein Feature View | Search PDB | Q9RX88  
    Molecule: 50S ribosomal protein L17
    Polymer: 19 Type: protein Length: 118
    Chains: R
    Organism: Thermus thermophilus
    Gene Names: rplQ rpl17 TTHA1663
    UniProtKB: Protein Feature View | Search PDB | Q9Z9H5  
    Molecule: 50S ribosomal protein L20
    Polymer: 20 Type: protein Length: 118
    Chains: U
    Organism: Thermus thermophilus
    Molecule: 50S ribosomal protein L21
    Polymer: 21 Type: protein Length: 100
    Chains: V
    Organism: Thermus thermophilus
    Molecule: 50S ribosomal protein L29
    Polymer: 22 Type: protein Length: 70
    Chains: 2
    Organism: Thermus thermophilus
    Gene Names: rpl29p rrnAC1604
    UniProtKB: Protein Feature View | Search PDB | P10971  
    Molecule: 50S ribosomal protein L30
    Polymer: 23 Type: protein Length: 60
    Chains: 3
    Organism: Thermus thermophilus
    Gene Names: rpmD TTHA1674
    UniProtKB: Protein Feature View | Search PDB | Q5SHQ6  
    Molecule: 50S ribosomal protein L27
    Polymer: 24 Type: protein Length: 91
    Chains: 0
    Organism: Thermus thermophilus
    Molecule: 50S ribosomal protein L31
    Polymer: 25 Type: protein Length: 73
    Chains: 4
    Organism: Thermus thermophilus
    Molecule: 50S ribosomal protein L32
    Polymer: 26 Type: protein Length: 60
    Chains: 5
    Organism: Thermus thermophilus
    Molecule: 50S ribosomal protein L33
    Polymer: 27 Type: protein Length: 82
    Chains: 6
    Organism: Thermus thermophilus
    Gene Names: rpmG DR_2049
    UniProtKB: Protein Feature View | Search PDB | Q9RSS4  
    Molecule: 50S ribosomal protein L34
    Polymer: 28 Type: protein Length: 47
    Chains: 7
    Organism: Thermus thermophilus
    Gene Names: rpmH DR_2152
    UniProtKB: Protein Feature View | Search PDB | Q9RSH2  
    Molecule: 50S ribosomal protein L35
    Polymer: 29 Type: protein Length: 64
    Chains: 8
    Organism: Thermus thermophilus
    Molecule: 50S ribosomal protein L36
    Polymer: 30 Type: protein Length: 36
    Chains: 9
    Organism: Thermus thermophilus
    Molecule: 50S ribosomal protein L11
    Polymer: 31 Type: protein Length: 141
    Chains: K
    Organism: Thermus thermophilus
     
  •   Structure Validation Hide

    Download full validation report    

     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 2
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 3
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 4
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 5
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 6
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 7
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 8
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 9
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 10
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 11
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 12
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 13
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 14
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 15
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 16
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 17
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 18
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 19
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 20
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 21
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 22
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 23
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 24
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 25
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 26
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 27
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 28
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 29
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 30
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 31
    Scientific Name: Thermus thermophilus   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    2B64  30S ribosomal subunit, tRNAs, mRNA and release factor RF1 from a crystal structure of the whole ribosomal complex 
    2B66  50S ribosomal subunit from a crystal structure of release factor RF1, tRNAs and mRNA bound to the ribosome 
    2B9M  30S ribosomal subunit from a crystal structure of release factor RF2, tRNAs and mRNA bound to the ribosome 
    2B9O  30S ribosomal subunit, tRNAs and mRNA from a crystal structure of the whole ribosomal complex with a stop codon in the A-site 
    2B9P  50S ribosomal subunit from a crystal structure of the ribosome in complex with tRNAs and mRNA with a stop codon in the A-site 
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: RR0131
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Composite of PDB entries (2B9M and 2B9N)