2B15

The crystal structure of 2,4-dinitrophenol in complex with human transthyretin

Structural Biology Knowledgebase: 2B15 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.218
  • R-Value Work: 0.190

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2B15

Classification: TRANSPORT PROTEIN

Total Structure Weight: 28115.33

Macromolecule Entities
Molecule Chains Length Organism Details
Transthyretin A, B 127 Homo sapiens Gene Name(s): TTR Gene View PALB

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DNF
Query on DNF

A, B 2,4-DINITROPHENOL
C6 H4 N2 O5
UFBJCMHMOXMLKC-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.218
  • R-Value Work: 0.190
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 42.58 α = 90.00
b = 85.61 β = 90.00
c = 63.94 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-09-15
  • Released Date: 2006-07-18
  • Deposition author(s): Morais-de-Sa, E., Neto-Silva, R.M., Pereira, P.J., Saraiva, M.J., Damas, A.M.

Revision History

  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4