2AZQ

Crystal Structure of Catechol 1,2-Dioxygenase from Pseudomonas arvilla C-1

Structural Biology Knowledgebase: 2AZQ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.65 Å
  • R-Value Free: 0.284
  • R-Value Work: 0.229

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2AZQ

Classification: OXIDOREDUCTASE

Total Structure Weight: 35144.39

Macromolecule Entities
Molecule Chains Length Organism Details
catechol 1,2-dioxygenase A 311 Pseudomonas putida EC#: 1.13.11.1 IUBMB
Mutation: P228F, E299A
Gene Name(s):

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PCF
Query on PCF

A 1,2-DIACYL-SN-GLYCERO-3-PHOSHOCHOLINE
C40 H80 N O8 P
KILNVBDSWZSGLL-KXQOOQHDSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FE
Query on FE

A FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.65 Å
  • R-Value Free: 0.284
  • R-Value Work: 0.229
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 62.73 α = 90.00
b = 71.52 β = 90.00
c = 187.09 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-09-12
  • Released Date: 2005-10-04
  • Deposition author(s): Earhart, C.A., Vetting, M.W., Gosu, R., Michaud-Soret, I., Que, L., Ohlendorf, D.H.

Revision History

  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4